Page 64 - Hormel Institute Annual Report 2021-22

64 | THE HORMEL INSTITUTE // UNIVERSITY OF MINNESOTA The Hormel Institute // JULY 1, 2021 – JUNE 30, 2022
PUBLICATIONS
Liu, C., Shi, W., Becker, S. T., Schatz, D. G., Liu, B., & Yang, Y. (2021). Structural basis of mismatch recognition by a SARS-CoV-2 proofreading enzyme. Science, 373(6559), 1142-1146.
Shi, W., Zhou, W., Chen, M., Yang, Y., Hu, Y., & Liu, B. (2021). Structural basis for activation of Swi2/Snf2 ATPase RapA by RNA polymerase. Nucleic acids research, 49(18), 10707-10716.
Ye, G., Liu, B., & Li, F. (2022). Cryo-EM struc- ture of a SARS-CoV-2 omicron spike protein ectodomain. Nat Commun, 13(1), 1214.
Pant, K., Peixoto, E., Richard, S., Biswas, A., O’Sullivan, M. G., Giama, N., Ha, Y., Yin, J., Carotenuto, P., Salati, M., Ren, Y., Yang, R., Franco, B., Roberts, L. R., & Gradilone, S. A. (2021). Histone Deacetylase Sirtuin 1 Promotes Loss of Primary Cilia in Cholangio- carcinoma. Hepatology, 74(6), 3235-3248.
Hu, Y., & Liu, B. (2022). Roles of zinc-bind- ing domain of bacterial RNA polymerase in transcription. Trends in Biochemical Sciences, 47(8), 710-724.
Aziz, F., Khan, I., Shukla, S., Dey, D. K., Yan, Q., Chakraborty, A., Yoshitomi, H., Hwang, S. K., Sonwal, S., Lee, H., Haldorai, Y., Xiao, J.,
Huh, Y. S., Bajpai, V. K., & Han, Y. K. (2022). Partners in crime: The Lewis Y antigen
and fucosyltransferase IV in Helicobacter pylori-induced gastric cancer. Pharmacol Ther, 232, 107994.
Yoshitomi, H., Lee, K. Y., Yao, K., Shin, S. H., Zhang, T., Wang, Q., Paul, S., Roh, E., Ryu, J., Chen, H., Aziz, F., Chakraborty, A., Bode, A. M., et al. (2021). GSK3β-Mediated Expression of CUG-Translated WT1 Is Critical for Tumor Progression. Cancer Res, 81(4), 945-955.
Wang, Q., Morris, R. J., Bode, A. M., & Zhang, T. (2022). Prostaglandin Pathways: Oppor- tunities for Cancer Prevention and Therapy. Cancer Research, 82(6), 949-965.
Hartono, S. P., Bedell, V. M., Alam, S. K., O’Gorman, M., Serres, M., Hall, S. R., Pal, K., Kudgus, R. A., Mukherjee, P., Seelig, D. M., Meves, A., Mukhopadhyay, D., Ekker, S. C., & Hoeppner, L. H. (2022). Vascular Endothelial Growth Factor as an Immediate-Early Activator of Ultraviolet-Induced Skin Injury. Mayo Clinic Proceedings, 97(1), 154-164.
Serra-Cardona, A., Yu, C., Zhang, X., Hua, X., Yao, Y., Zhou, J., Gan, H., & Zhang, Z. (2021). A mechanism for Rad53 to couple leading – And lagging-strand DNA synthesis under replication stress in budding yeast. Proceedings of the National Academy of Sci- ences of the United States of America, 118(38), e2109334118.
Sun, L., Wang, Y., Wang, X., Navarro-Corcuera, A., Ilyas, S., Jalan-Sakrikar, N., Gan, C., Tu, X., Shi, Y., Tu, K., Liu, Q., Lou, Z., Dong, H., Sharpe, A. H., Shah, V. H., & Kang, N. (2022). PD-L1 promotes myofibroblastic activation of hepatic stellate cells by distinct mechanisms selective for TGF-β receptor I versus II.
Cell Reports, 38(6), 110349.
Jones, B. C., Pohlmann, P. R., Clarke, R., & Sengupta, S. (2022). Treatment against glu- cose-dependent cancers through metabolic PFKFB3 targeting of glycolytic flux. Cancer and Metastasis Reviews, 41(2), 447-458.
Sautès-Fridman, C., Dimberg, A., & Verma, V. (2022). Editorial: Tertiary Lymphoid Struc- tures: From Basic Biology to Translational Impact in Cancer. Front Immunol, 13, 870862.
lam, S. K., Zhang, Y., Wang, L., Zhu, Z., Hernan- dez, C. E., Zhou, Y., Yang, N., Lei, J., Chen, X., Zeng, L., Klein, M. A., & Hoeppner, L. H. (2022). DARPP-32 promotes ERBB3-mediated resistance to molecular targeted therapy
in EGFR-mutated lung adenocarcinoma.
Oncogene, 41(1), 83-98.
Aziz, F., Li, X., Chakraborty, A., Zheng, Y.,
Xin, M., Liu, K., et al. (2022). Ubiquitination
of ADRα1d/SerpinA1 complex stimulates hypoxia to induce gastric tumorigenesis with a combination of Helicobacter pylori and chronic stress through IL-1α. Gastric Cancer, 25(4), 726-740.
Molina, E., Hong, L., & Chefetz, I. (2021). NUAK Kinases: Brain-Ovary Axis. Cells, 10(10), 2760
De Vitto, H., Arachchige, D. B., Richardson, B. C., & French, J. B. (2021). The intersection of purine and mitochondrial metabolism in cancer. Cells, 10(10), 2603.
Gao, Y. G., McDonald, J., Malinina, L., Patel, D. J., & Brown, R. E. (2022). Ceramide-1-phos- phate transfer protein promotes sphingolipid reorientation needed for binding during mem- brane interaction. J Lipid Res, 63(1), 100151.
Li, J., Ma, X., Banerjee, S., Chen, H., Ma, W., Bode, A. M., et al. (2021). Crystal structure of the human PRPK–TPRKB complex. Communications Biology, 4(1), 167.
Le, L. T. M., Thompson, J. R., Dang, P. X., Bhandari, J., & Alam, A. (2022). Structures of the human peroxisomal fatty acid transporter ABCD1 in a lipid environment. Communications Biology, 5(1), 7.
Yadav, A. K., & Jang, B. C. (2022). Anti-adi- pogenic and Pro-lipolytic Effects on 3T3-L1 Preadipocytes by CX-4945, an Inhibitor of Casein Kinase 2. Int J Mol Sci, 23(13), 7274.
Pant, K., Richard, S., & Gradilone, S. A. (2021).
Short-Chain Fatty Acid Butyrate Induces Cilia Formation and Potentiates the Effects of HDAC6 Inhibitors in Cholangiocarcinoma Cells. Front Cell Dev Biol, 9, 809382.
Li, Y., Gao, F., & Liu, S. (2022). Editorial: Mechanisms of Epigenetics and Genetics in Leukemogenesis. Front Oncol, 12, 896094.
Paul, S., Jakhar, R., Bhardwaj, M., Chauhan, A. K., & Kang, S. C. (2021). Fumonisin B1 induces poly (ADP-ribose) (PAR) polymer-mediated cell death (parthanatos) in neuroblastoma. Food and Chemical Toxicology, 154, 112326.
Yao, Y., Wen, Q., Zhang, T., Yu, C., Chan, K. M., & Gan, H. (2022). Advances in Approaches
to Study Chromatin-Mediated Epigenetic Memory. ACS Synthetic Biology, 11(1), 16-25.
Aziz, F., Chakraborty, A., Khan, I., & Monts, J. (2022). Relevance of miR-223 as Potential Diagnostic and Prognostic Markers in Cancer. Biology, 11(2), 249.
Gao, Y. G., Le, L. T. M., Alam, A., & Brown, R. E. (2021). A Simple and Straightforward Approach for Generating Small, Stable, Homogeneous, Unilamellar 1-Palmitoyl 2-Oleoyl Phosphatidylcholine (POPC) Bilayer Vesicles. Bio Protoc, 11(24), e4271.
Shi, X., Wang, X., Neuwald, A. F., Halakivi- Clarke, L., Clarke, R., & Xuan, J. (2021).
A Bayesian approach for accurate de novo transcriptome assembly. Sci Rep, 11(1), 17663.
Li, Y., Mao, P., Basenko, E. Y., Lewis, Z., Smerdon, M. J., & Czaja, W. (2021). Versatile cell-based assay for measuring DNA alkyla- tion damage and its repair. Sci Rep, 11(1), 18393.
Chen, X., Neuwald, A. F., Hilakivi-Clarke, L., Clarke, R., & Xuan, J. (2021). ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements. PLoS Comput Biol, 17(7), e1009203.
Aziz, F., Chakraborty, A., Liu, K., Zhang, T., Li, X., Du, R., Monts, J., Xu, G., Li, Y., Bai, R., et al. (2022). Gastric tumorigenesis induced by combining Helicobacter pylori infection and chronic alcohol through IL-10 inhibition. Carcinogenesis, 43(2), 126-139.
Ren, Y., Wang, T. Y., Anderton, L. C., Cao, Q.,
& Yang, R. (2021). LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data. BMC Genomics, 22(1), 574.
Trager, M. H., Geskin, L. J., Samie, F. H., & Liu, L. (2022). Biomarkers in melanoma and non-melanoma skin cancer prevention and risk stratification. Experimental Dermatology, 31(1), 4-12.